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ERIC Number: EJ998975
Record Type: Journal
Publication Date: 2012-Jun
Pages: 5
Abstractor: As Provided
ISBN: N/A
ISSN: ISSN-0021-9584
EISSN: N/A
An Experiment Illustrating the Change in Ligand p"K"[subscript a] upon Protein Binding
Chenprakhon, Pirom; Panijpan, Bhinyo; Chaiyen, Pimchai
Journal of Chemical Education, v89 n6 p791-795 Jun 2012
The modulation of ligand p"K"[subscript a] due to its surrounding environment is a crucial feature that controls many biological phenomena. For example, the shift in the p"K"[subscript a] of substrates or catalytic residues at enzyme active sites upon substrate binding often triggers and controls enzymatic reactions. In this work, we developed an experiment using spectrophotometric method to demonstrate how ligand p"K"[subscript a] values can be influenced by specific interactions in the protein-binding pocket using riboflavin binding protein (RP) and its ligands (riboflavin, RF, and neutral red, NR). A direct plot of observed absorbance versus pH was analyzed by nonlinear regression. The p"K"[subscript a] values of free and RP-bound RF were determined to be 10.0 plus or minus 0.1 and approximately 13.3, respectively, and the p"K"[subscript a] values of free and RP-bound NR were 6.8 plus or minus 0.1 and 7.8 plus or minus 0.1, respectively. This laboratory clearly demonstrates that the environment of a protein-binding site can affect the p"K"[subscript a] value of a ligand. The experiment can be adapted or used as-is for undergraduate students in biochemistry or chemistry (analytical or physical chemistry) or first-year graduate students in biochemistry and related fields. (Contains 2 figures and 1 scheme.)
Division of Chemical Education, Inc and ACS Publications Division of the American Chemical Society. 1155 Sixteenth Street NW, Washington, DC 20036. Tel: 800-227-5558; Tel: 202-872-4600; e-mail: eic@jce.acs.org; Web site: http://pubs.acs.org/jchemeduc
Publication Type: Journal Articles; Reports - Research
Education Level: Higher Education
Audience: N/A
Language: English
Sponsor: N/A
Authoring Institution: N/A
Grant or Contract Numbers: N/A