In Africa women are underrepresented in higher education (HE) agricultural programs, despite the fact that they make up half of the agricultural labor force. This article discusses the reasons for women's low enrollment in HE agricultural programs, focusing on socio-cultural norms and gendered perceptions of agriculture. Moving beyond access, it also explores the institutional culture and learning environment in HE agricultural programs. We argue that women often feel unsafe, uncomfortable, and isolated in these programs and that conservative socio-cultural norms, which discriminate against women in society and family life, also permeate institutions of HE. The data comes from a literature review, a Southern and Eastern Africa regional workshop, and focus groups and interviews conducted with faculty and students in South Sudan and Mozambique. We conclude with recommendations for increasing the number of women in agricultural programs and improving their experience.